Scaffold Ga0114255

Basic Information
Taxon OID	3300008098 Open in IMG/M
Scaffold ID	Ga0114255_100040 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008098 Open in IMG/M

Scaffold ID

Ga0114255_100040 Open in IMG/M

Source Dataset Name

Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 reassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	153998
Total Scaffold Genes	137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	124 (90.51%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

153998

Total Scaffold Genes

137 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

124 (90.51%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F089057	Metagenome	109	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F103435	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114255_100040118	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDCDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNVIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTDRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDDKYQVPYRWAEAEFVNYDQNTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTANFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0114255_10004044	F099452	AGG	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSVNVFTLYKDIINLDDVSLLTDLRNTEWYKDWFTEDKRNSDLIDLTKFNFRSLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLTAENILINHGFFNNTDYNLYEVPDEHMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSIYFTIFDSLNEDTRTRAR*
Ga0114255_10004083	F089057	GGAGG	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDTNDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNMDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0114255_10004091	F103435	N/A	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYQYLIDNPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYNIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114255_100040

Overview

Ecosystem & Geography

Associated Families

Sequences