NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114255_102909

Scaffold Ga0114255_102909


Overview

Basic Information
Taxon OID3300008098 Open in IMG/M
Scaffold IDGa0114255_102909 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8255
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078842Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114255_1029091F078842N/AMIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALREFDKLVISEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQLSPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVPEYSIDESHIQTPVDQALAAVVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKNDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMANSAQIRQMINSIELDVYEVNS*
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