Basic Information | |
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Taxon OID | 3300008105 Open in IMG/M |
Scaffold ID | Ga0114338_1037185 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2211 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016494 | Metagenome / Metatranscriptome | 246 | N |
F024962 | Metagenome / Metatranscriptome | 203 | N |
F028417 | Metagenome / Metatranscriptome | 191 | N |
F031075 | Metagenome / Metatranscriptome | 183 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114338_10371852 | F028417 | N/A | LSKEMATNESSDNKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQNPKFKFINSYNDYIFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPLWKINPTSVIEFINSTLSASARK* |
Ga0114338_10371853 | F016494 | N/A | MSQKDNNSEEIAIDNFIELGQLVKSTLQTVDELFPPKPEFSFENMMVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAINTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQPS* |
Ga0114338_10371854 | F031075 | N/A | MSQEKSTSVSETVNRKENPEDCGHEVNACTCPPNKEYEKYTKIRALTHLIGMINFMPPFDAPISYGPLERIWNFKKQIREIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQDKLDATSSEELSSEEENGK* |
Ga0114338_10371855 | F024962 | AGGA | MKILKSIIKEQVENKIGPILKEKYHENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSVENITGLDHLLSSKIIDTLEIYLEALEETNIDERQRKLYYTDSFAAVWNHRKIEDIIRHPWSIELCRRNNWIAEMPKDN* |
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