NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114338_1053844

Scaffold Ga0114338_1053844


Overview

Basic Information
Taxon OID3300008105 Open in IMG/M
Scaffold IDGa0114338_1053844 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059639Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0114338_10538442F059639GGAMWERSKRKERSPGEGEKEVRKSLRLEDMETSFDFCERMTKMMDAYKEKVGTTLARMDMEGNPTNNDIKVWLKELAVTQMTGMDEMACMVTEVVEEMDAMQDEVKGKDKEIRKLRDKLEEQSSVVSSVVVTKDKMEVKASSKDMEDRLRLATTQFKVMDVDIGKETDNRAEIITKGMAAIKDKVRSDMQEEWTKLAEGVDVAPLVRKTAKPTGKDHFSAPLLFTVQDKAKRWRMEEILRNSKIYPGFHWPQEMLTVLKDYKTVLKDNGVDDSTTYIRIRPVEREGKVKLRADTKVKEGSGKFSTRATWEAPPLCPEVRKKSRDHLKPIWASARG*
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