NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114338_1073699

Scaffold Ga0114338_1073699


Overview

Basic Information
Taxon OID3300008105 Open in IMG/M
Scaffold IDGa0114338_1073699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1319
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F017436Metagenome / Metatranscriptome240N

Sequences

Protein IDFamilyRBSSequence
Ga0114338_10736993F008991AGGMNLTVKITEQVEKKLETVLKGRYDNRTIWMYYKVSLQILRDTIENLIACHHTTHPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWAI*
Ga0114338_10736994F017436N/AMDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIAALSRNSDRYRFKRIQLALYILLSEALSIEGSNERYKGLKDMYYFMDRLKTTTFDEWKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.