NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114338_1084418

Scaffold Ga0114338_1084418


Overview

Basic Information
Taxon OID3300008105 Open in IMG/M
Scaffold IDGa0114338_1084418 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021716Metagenome / Metatranscriptome217N
F028720Metagenome / Metatranscriptome190N
F030673Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0114338_10844181F030673N/AMLVASVAFDLTHIFTLVFTSLLYQKAGIEKTIVSTVYNGDKIQSGDNYLLPGLAEITWKQAENSCFNQKAKILIVEKDMDMKKIMTDLELNTIWVGVYKSLTMDVFVDDQERSLVTSTDNDTIDHSALNAFSFAETQAVILRKTGNDLKYETVLKTKHHRCICMQKIPFPRRKSDILGLKTLQDNLAQEISLLTDTV
Ga0114338_10844182F021716GAGMVMRLVCTSYWWEPATVTFKVTCLCVRGARFADLFWPQTVQKDDFLVVIPFGNDLHIRRFVRYDRFLKVFHLDKFVPYPKSYWDSLFSRLHEKLSNKNCKITVIDNFYRHLCCERHRHKGWLTYQTAVNKELRTQFKDTSVHILDHRLLFDNPRLIKNSALEYRKLQGDAVHFEDYLPIAKNLLKML*
Ga0114338_10844183F028720N/ANKALLDLYKVMDNRGGPKEVNRYSGYCLHFVVLLDTIALNTGDCDLNYAMDDPNSFDPLCKSTLLSVAASLSGIARTFWVEKRIHNRGDPDRDEWESLEYAASRETCHMLELALTRVLRYIKTNTDLTLTEMATQHVDIFYGREPTPARGYDLC*
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