Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1000081 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 78520 |
Total Scaffold Genes | 97 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (53.61%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004169 | Metagenome / Metatranscriptome | 450 | Y |
F008358 | Metagenome / Metatranscriptome | 334 | Y |
F013889 | Metagenome / Metatranscriptome | 267 | Y |
F024768 | Metagenome / Metatranscriptome | 204 | Y |
F077003 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100008167 | F004169 | N/A | MSEDDLKSVIAKYQQKSFELFNQNIVLETQVEKLNITVSALSAELEKLKKPKRGTKTEGEFE* |
Ga0114340_100008187 | F077003 | AGGAG | MVVLLSTAIISCQQALGIIHRLTKVVGLTETQKSEIVAEVRKTIPFCPVVIKKDAK* |
Ga0114340_100008189 | F008358 | N/A | MNPYYIWFVIFFCIGYLIVTDSSIARLFILLTKLAEVEYRKFKWWMVHNPMNPIVKYLMWRRSLQLAKELQEELAKKQENI* |
Ga0114340_100008190 | F013889 | GAGG | MSRTYRKTEGMHSGALRFPHTFSEIKKLDGLLHEEDLEGLPFSGLNHIKAREHNLPTSWDDKVVSAYYQEDYKAS* |
Ga0114340_100008197 | F024768 | N/A | MDYETEIIDGHKAVVRHFFKPHEIQVGSRWARADGSKGYVTVEGFNSFGETDPWYEVVYSWEENGVKKIWQKEN |
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