Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000324 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33165
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (36.67%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

33165

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (36.67%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F084145	Metagenome / Metatranscriptome	112	Y
F091925	Metagenome / Metatranscriptome	107	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100032420	F048940	N/A	MTAAQRMEKQFFMNFITLVNEVQGKQKLPSQVGSYRKSSWCKQVSNPKQKKDALARI*
Ga0114340_100032423	F015080	N/A	MFEQLEFEAHSIPGAIQGRYKFRNDWSISVVAGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMKVLVQL*
Ga0114340_100032424	F058096	N/A	MNTELSIGECKIMWVVGALERLATLGLIGPDVPLKLTGNAVDDYLQIDEHRELLFESDFEIASIFTALANDECDPELQNPEDTKPIIDLLLEYKDNRTEIVKYALSQQFV*
Ga0114340_100032426	F084145	N/A	MFLSCPVSFDLIDAEWYQDVDNAKEDALDWSVELSGETVFVYQAVEGEDGEYEFNKLYSICA*
Ga0114340_100032437	F091925	N/A	MTSISFTSGELLDIISALEEKENALYLAENYQLSAYYMNLGVQFQKVYDKLQEVAGEKRVAKLVLTVN*
Ga0114340_100032439	F027828	N/A	MLIGFKSVKMTELITETMLDTVLTIEEILTEKQLTALRDIMYFYKEFELELYEYPPEDTLFTKTQRELFDIFDIK*
Ga0114340_100032442	F061794	N/A	MPFSKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVDKGKHLLKKYISNLS*
Ga0114340_100032447	F081258	N/A	MTITFPRLSAGIYEVQQDSNTVGFIRKASASKWIVADVVDTPQHVSKTLKDAKDACINLIIFESVDSTPADEYNESVDVDKVNPELNKKLEGSLNCYKQVPGTDEFVKVCPSELGFAKPTLEPIEF*
Ga0114340_100032459	F093764	N/A	MARRNKSASRQMVENLQDQLVEYFQENVFDDCDYEDLTGSELLEALVGTFREIESEIQKKLNPIQFVLNKLDPEDSESQVLNG*
Ga0114340_100032460	F073458	N/A	IALASEIVDTNPAGAQLIANLTKAETGAELLEALDNYDSTVLENYSEPVDSEDDGYVSLTDADGTVTYV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000324

Overview

Ecosystem & Geography

Associated Families

Sequences