Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000355 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41116
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (74.51%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

41116

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (74.51%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F004006	Metagenome / Metatranscriptome	457	Y
F005054	Metagenome / Metatranscriptome	413	Y
F006841	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100035525	F004006	AGGA	MTNDIEQLVASISLNKVLIAILEEHKQLSVPTLRFLESKDTDKELVIDYDESGPSFTFSLKEREQENDN*
Ga0114340_100035532	F001464	N/A	MVRTKRQRPRKKLLYFFLNGKIHKVVRASKARDELVAWCYPDKKRVMYSYSQVKKNMGNAYTIKQVCEILGRHRVTVEEYILQGKIKEPQRVYPISNPDSSWYKFMFSESDIYDLHQFILDAGYTKDFPSKAELTALLKHNLILYTKTDEGGFVPVWKAE*
Ga0114340_100035544	F006841	AGGAGG	LATTVYDVEEITLQNGDKVKLKPLTIKALRKFMAAIAKTATSQTEDETLTILIEACAVAIESQLPELAADMDKLEGALDMPTINRILEVCGGIKLDDPNLGAAAVLAGQNSI*
Ga0114340_100035546	F000258	GGAGG	MTVNYKLDAMLELRKFLWGRLTTLNIFDDEDYYSDNLGESIIPILPVQQAPEMNQFLSGKKHIVYDKIGSSYEDNWMVCCEQILFTIYSTDISEINEIRNFMMDEFRRMDESARDINRWSGLSDKFKFYSIFIADISPTEPSEELQGFFSTDVILEVKYSRMVDSVGRFS*
Ga0114340_100035548	F001229	AGG	MYDLIDSVLSMKMDVYRQSDLQDPDTGAIVKQWNYYKTIDCHAKGIISNSATTRSSDKQIMSNKYSNEQVIQVRTLERVLFREKVTNVRNKDGLVIWSEINFPTETPTVFEVMGSTPITDPFGEVIAWNTTMKRSENQQIGL*
Ga0114340_100035549	F005054	N/A	MAEVLIRTQSPVTHQVFWNGDIATPDSTPIVKLYDITDDPAINPLINPTQLLETLTAVLDENNPGTYTVYVPYEYTDRNRTLRLQWEYTIEGTNVARTDEVFVVTPYVDFNHVQDLGFSTDSSDPNYRSYKDLVRAEKYARKQIEQYTGQSFFLYDDVFVLNGYDSDTLPLPAKIYELHELYANDILLLDTINEIDNWNYSVQISETGYGIKVNRANALDNTVYTANGMVPPTINDSSGIFQDNVSYKVQGRFGWERVPDDVELAAIELMKDYFSKDTTWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVQVI*
Ga0114340_10003557	F000376	AGGA	MSEYQDKAKECKCCGKHVPLPTVLKEYNGITLCPTTFANVIEYKRIWKNLGNRPIGSIRKHFSDYVQQIVEQTIDKNEDGSLQ*
Ga0114340_10003559	F000369	N/A	MDIELTDHFDRMNKVVSELLKGSNPTQIATITGMPRKDVVELIDEWKAVVHNDTTARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAEIASQVAEAERKQELLVKILKEVTAQCSKCKMEVAKRLSQITGVVESIVIEDASGS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000355

Overview

Ecosystem & Geography

Associated Families

Sequences