Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000545 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28983
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (85.37%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28983

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (85.37%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F005233	Metagenome	407	Y
F010672	Metagenome	300	Y
F019448	Metagenome	229	Y
F023041	Metagenome	211	Y
F085230	Metagenome	111	Y
F087179	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100054519	F019448	AGGAG	MTAMTKTQMVNACVDYEVDWFFDQTLEEQKEVYRHLQLHGFTGFKNVPDHNLFASCVDKGIFLMEE*
Ga0114340_10005452	F005233	N/A	MLEHLINGEFEPDVVATTMATPLPFAQAAPADIIDAQVQTAQWLKDLGLDDEEVESKADAQAARSSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERVEVKKTQMSDVELETRIKEKLNRFMGVIDVVDVAEDQPDEA*
Ga0114340_100054521	F085230	AGGAGG	MKVKELIGYLQQCDPETEVYTFNDHEIHAIECVDASMTEWVHLNLGERQ*
Ga0114340_100054523	F023041	AGGAG	MNNPPYDTGKVKIGLTYTPPPPESTPESDWIQGVLLGDKQGMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA*
Ga0114340_100054524	F010672	AGGAGG	MPDMQTALKTALTRTLQEWDDDGEISPQTPTINTTINNSVPTPSQGIPMKKTFNITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFAGGSTSSLIAQMRRNKMIHETNNLYYADIAEYRPIKSLKALKKLEAPIAPPKRKYEKKAVTGIGALLREKLENMPVSSQDALDAAAYAMGGHTPKRVISLVRVKSPEDILKDMTVYQAHDLYRHLKQMFGN*
Ga0114340_100054529	F002653	AGGAG	MNYADFDGSMSEAELHRRVTAMSDEEQAHFKLLIHKLVMCYGDGNAQGVVIIGRAEDALAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN*
Ga0114340_100054531	F087179	AGGAG	MKYSQSKELVDELMNIAVLFHASALLRTKIADVIDKHIPDLDPACMERGCTAVDDYKEKNVSTL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000545

Overview

Ecosystem & Geography

Associated Families

Sequences