Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000883 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25954
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (41.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

25954

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (41.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F004208	Metagenome / Metatranscriptome	448	Y
F007569	Metagenome / Metatranscriptome	348	Y
F027748	Metagenome / Metatranscriptome	193	Y
F041726	Metagenome / Metatranscriptome	159	Y
F048268	Metagenome / Metatranscriptome	148	Y
F054801	Metagenome	139	N
F064683	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100088314	F007569	GGAGG	MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHECGEILDELFDVVYTQKQEQVT*
Ga0114340_100088338	F041726	GAGG	MKTYRMLIEYWVPDEDENLFEEKIIQSRSSCGKIADDYLAQDRTNLIRSVEVTPV*
Ga0114340_100088339	F048268	N/A	MQLSTQSVSKIADALKPVVIDYIHEDEGYVEYMQTAVIEGIRNTMGDMDEDLLFELGMLIFDRIELK*
Ga0114340_10008834	F054801	N/A	VTYKVRYTGFGPYKDKFEPNQIFTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVKE*
Ga0114340_100088343	F000744	GGA	MKDVNVNLNVHEIGVILSALQELNLREENRIAREYGSVPALYAKLYDLWEQMDRSETGLRNDVVPSF*
Ga0114340_10008835	F004208	GAGG	MTYSLNQEAKAFSYTREELFECITKIVAHPHTAITKHDQSRALAIMVVFEDYFSNFLESDNNGSHYVYERDELDFEDFVRHKLGPEYCHRIDADEVLK*
Ga0114340_100088368	F027748	N/A	MSTATRLTANQAKSAIYDLADDFSWETVAKEMVARMSGDEARDFLEDFQRLYAD*
Ga0114340_100088370	F064683	N/A	MTADLAASLLNRAANGAELLSILDTIANDIADANIADCAAHYARISAQPTLSEIQF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000883

Overview

Ecosystem & Geography

Associated Families

Sequences