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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1001208 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16318 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047017 | Metagenome | 150 | Y |
| F057318 | Metagenome / Metatranscriptome | 136 | Y |
| F079990 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_10012084 | F047017 | AGGAG | MATPEEMAMGFPSNPFLNQGTVNKSTTKNPPVATWIINLLKNEPQLKAIYDAVRNPTTGEFIYNADAIADMITSSDWYLSKGPTVAANLVGRQKYGEKWYQDRVNQYKVTVSGIANGMGINASDPTVADYLTGLAETSFLNGWDAEYIENTIIGNASIISKAGGGLYQSKIDDIRSYGKLMGVDVSQTTANNYLNRIIGTVTPQGLRVKTTPEAIKKEIADQQALLYPFFADDFAAGRTLWDVTSLQRKKWADLLEVDEDSLDWNDPLWKDGRIFTVVDEKTGKIVQRPAWDAEKLIKQDERWQYTENATRTYEGLGANMLRRMQYIK* |
| Ga0114340_10012087 | F057318 | GGAGG | MAKAKDENFQVSATGGAGTNGQPARYAAGIDNAQDFYDMQTSAPMSGQNPALRQSPSGNRAFRTTGQTDLVPLTAPTTRPQEDVLTGATTGLEGMYATDQTAMGEDADRMRQALPYLSIMAELPSTSNSFRNYVRYLKSVL* |
| Ga0114340_10012088 | F079990 | AGGAGG | MKKSIAGGKKPKNQGSAGKAPMQKPMMAKKASSKGGKTYFSSNPSGTRGSRSK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |