Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1002675 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10915
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10915

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (72.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F032194	Metagenome / Metatranscriptome	180	N
F069824	Metagenome / Metatranscriptome	123	N
F073146	Metagenome / Metatranscriptome	120	N
F078379	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10026751	F073146	GAG	MSEPVSEAVMTITEVSPFHFSIEIEGSDLSLEVSEIMVKFLNDCLQQIHADKKIH*
Ga0114340_100267510	F078379	N/A	MYWNHRVVDFSEENNGEPWVEVCEVFYNKNHEPYLYTARGVGVMGEDIKEVKQSLFRMLDCLDKPVLMKADFNKSIKVWMDEDTSQDS*
Ga0114340_100267517	F004362	AGGA	MTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNRDGELIEDAIKGLPLELRKILKARYVSHPYASQNQLAHHLRISTKRFETDLHNAKKRLQDQLDKKAKSKDYADLLKVSGEKDNREWDFRDIQSWD*
Ga0114340_100267519	F006502	AGG	MKEKGMSIMIGLLGKEPKMAEKSEGGLLESDTESCPLSTVDADINKGNKKKAILTANYGARKDGEGKCKACEYYMQGEEMTKCGVGKGMGHCAIFDFVCADENGCQAWEAKGSEEEMEMEDEE*
Ga0114340_10026752	F032194	GAG	MEAFYRTLKEVDIPTGQSMICEHFFAAGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDE*
Ga0114340_10026755	F069824	AGGGGG	MKDNFMPDFESRPAFSEQEYLWENHMKKGADCDVLDVDNFVEYLGKAVESKKGAEKWELYRQYAEKGDWHNFGRAVYFLVHDHIEDELL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1002675

Overview

Ecosystem & Geography

Associated Families

Sequences