NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1003536

Scaffold Ga0114340_1003536


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1003536 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10323
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F028150Metagenome / Metatranscriptome192Y
F078287Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100353610F000671AGGAGMDKVLCYSCNKSKNKLTLKRSSLLPINLLMCEGCINLKLEPRWLIIISGRQNGSESVRDFILKKRYEGSEISASELLT*
Ga0114340_100353612F000473N/AMFIDKNKNHFKHGINQWTGEPNKPVFYTQEMAKAIRGITKPANNLQMDIVKYPEFLAIRLYEDNFIQFEGTKKEMVIDYVAKVKRLLESYGVRCELEGVPSERILR*
Ga0114340_100353618F078287AGGAMPYNIKQNTAGCRGFAVVNDKGELKGCHPSKSRALAHQRALYAATANESKVKKTILGEGKSWLN*
Ga0114340_100353621F028150AGGGGGMNWLKKRIIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAVWFLTIGIRERAEKEEE*
Ga0114340_10035364F008814N/AMANITVLEEIIKEVSAELYQKWYNSVPESDKNEEASQAMAKNAGETTFFVIQSFMNKFNAAAEELKDK*
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