Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1003741 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9807
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (40.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9807

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (40.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F010397	Metagenome / Metatranscriptome	304	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100374110	F010397	AGGA	MNVNEFERTKPVVTMQKINDLIKLIEDERIKTEILYKDRVRSLDDISILLKDMKASFKKGE*
Ga0114340_100374111	F001840	GGA	MKDQDSIFLICDCFSHGLLVEKFKDEEEVSLSLFERGLSGRILPWRERLRWCWQILRYGKPWSDFIILNTENQKQLKEFLNECK*
Ga0114340_10037412	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININTNVKAPTLRMHVKRSVANGRYTVAGSQKTGKRGKPSIVYTYNTTTTVDQTASI*
Ga0114340_10037413	F079812	GAG	MDGNNRKIGYVKDSGSVIYAHGLNGENVGYYQKSTDTTFDRRGKRYGFGDLTNALVFEAVRKI*
Ga0114340_10037415	F039627	N/A	MTASFYKTVYQRKFEELPRWKKLAIVEDSERNNWSGLLTEFIKAVIEEAEKEYANSRSTVSNTPVEYVTESGNKFKKTIKKKN*
Ga0114340_10037417	F023346	N/A	MNNINKNIIITYAKALRTIQKEQIDPYIELIEKELIKLFPELEHRKDNALNWAYDILNAESNAEVVETLNRVEKIITEERKETWTCNYCGKNTYNDDVEYLFGTNHIGCALEDDIKNREHSDPDYILDARLRKICDLETELRETKRAIVNMELKLEHMRSDYHHEPTN*
Ga0114340_10037418	F045085	AGTAG	MSKIINLTVGIIFGSIFAISLILVLMIFFAVLIPFLFYFTVKEVLKYLTKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1003741

Overview

Ecosystem & Geography

Associated Families

Sequences