NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1004104

Scaffold Ga0114340_1004104


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1004104 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13727
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (88.89%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F003663Metagenome / Metatranscriptome474Y
F004666Metagenome / Metatranscriptome428Y
F005745Metagenome / Metatranscriptome391Y
F007470Metagenome / Metatranscriptome350Y
F015208Metagenome / Metatranscriptome256Y
F015988Metagenome / Metatranscriptome250Y
F017484Metagenome / Metatranscriptome240Y
F038205Metagenome / Metatranscriptome166Y
F038479Metagenome / Metatranscriptome166Y
F038643Metagenome / Metatranscriptome165Y
F043940Metagenome / Metatranscriptome155Y
F057310Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10041041F038479AGGAMTSLTLEQKIIKAAHLVANGELVSFRGASAETYARVMRLANRIEQEREFPQCPCGECD*
Ga0114340_100410410F015208GGGGGMYKISVAYDENAPHWSKEYSDELNAHEEFAKFVDWGFAEEYATINLFTPSGKCYTKIFHRNGKVVKR*
Ga0114340_100410414F038643AGGMIDTTNWVKYPFSVDGVDFISMLDPQGSMYQRVQTVPTAIFNSMNEGAIRELIGKVSLMSKSEIQTELDRVNAGFGQAYLALA*
Ga0114340_100410415F003663AGGAMLATAIELLEATKSSVFDEDIMGLAGEIHTRRNELSDEIFAKYLFMYSAALSSKVADRITQILLTETQLKEMLEVLDEMDNLSETILEENE*
Ga0114340_100410418F043940AGGMKNRFRVEIYDENKANDITIYSEQGVDKEYLTELVFSNLNNFFGNVRAYVYDNLKKKKTTAVYLPEQIVNRNRPRIPTKIEIGWPS*
Ga0114340_100410424F000311GGAGMYFELTAPDRLSMEMAYWDAQITGLDPVAIGPLTFNIGTGSIEKVSRIRDKFNLVESYVSDYEPTGYTRR*
Ga0114340_100410425F007470AGGAGMDYQDGFEDGVKFAREVIIANIRQWAESSDEGQVYDDIADRIEFGTVDYDL*
Ga0114340_100410427F000450GAGGVGNRANFGFVQPNGNTIVLYGHWAGHQMLGKLADAVIAARPRWNDPAYATRISISQIIGNDWSMETGFGLHVNEISDNEHKIAIVDWEQQTFSLHEEDDFRNTENKVRGMKNEAIFTMDLSTFCEKYALEEMLVN*
Ga0114340_100410429F000868AGGTGGMSFLENENQMVIDAIYQEIGEQLVEDWVNSNLDEGQMYADFRFAEMSNDNYIKGRFNQFYDLKPEDQYYLEWDEEA*
Ga0114340_10041043F057310AGGAMKITYSIWQGSIIKGTGFTANKMSEVMATIKELNSTDVKPKFEAFISKVEQETK*
Ga0114340_100410431F015988GGAMNELIEYIKIHLISLEQDLENIAQEMELLDPESKACKELDYEYNHMSGQILSARHFLSVADDILAKTKEN*
Ga0114340_100410432F005745AGGAGMQTDPTPLDERLQRMVNLKVPGIDIMHGELKMRMLEAEAELTEAQRIEEENDYSDAMESMERKYWEGYYDALVLCYGLTYDISFAIADKEAAE*
Ga0114340_100410435F004666AGGAMTSKREYLVSKGITVGKRGRFSGAAKTALAEAEKNGIKFTSEVKTPKK*
Ga0114340_10041046F017484AGGAGMGYIEIFEMNENGAGWVSLENASADTKLDLELAILTKSEMKMLCFKCHVEIPRGNVCVNHKNVKGAIYFD*
Ga0114340_10041049F038205AGGAMVNNLKEIIAVACDECGGAGFLFWGDENNYDVEQCDCALDVWGL*
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