Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1007175 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5769
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5769

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001781	Metagenome / Metatranscriptome	635	Y
F021288	Metagenome / Metatranscriptome	219	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100717511	F001781	AGGA	MKPDDKDKLNKCLDILDTTDLGLSMVWLWTWSTIKSFMQDDTFIMKKTEDEMWDCLCEAVEAGMGFSLEYGAEQHYEDVMEWMLNREYMVDSMFEEEEAEDEDE*
Ga0114340_100717512	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAIAKGITFTADQPVKKAK*
Ga0114340_100717513	F022414	AGGCGG	MSKTTEIKLAEQIANLTDDHWFNPAIFGRYLAEQPIYTIDRIMEMVAYIISEQAKTYQVQKVRGTSSEGLLLANELNECIKAYQEVNVINNLTLPKPTVYHTKREVKVEPKQYGWTDEDKNPFDQV*
Ga0114340_10071752	F000714	N/A	VEDATIPYTDSPLPTEEEKMETTETSTVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNAVLQDKINHAKDIIAEAYPDSGDQDTLRAIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
Ga0114340_10071754	F001043	GGAG	MSDYKDGFQDGYKFAREEIMEKLSEIDIADIDTWILDRLAEMIEGGSL*
Ga0114340_10071756	F001125	GGCGG	MGDRANFGFKDRKGDTIFLYGHWAGHRMLENLADAVSAAESRWDDETYATRIAISNLINDEWKSTTGWGISVNQLADNEHKVPIINWSAKTFTLMEEDLQTEVFSLPLAGFVSKYSSQSVMV*
Ga0114340_10071759	F021288	AGGAG	MLGYTQKDLADMTYGVYQADLLVNADENPAIHNYLVMAHDFLQGLWAEGYFDHAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1007175

Overview

Ecosystem & Geography

Associated Families

Sequences