Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1008693 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6562 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (20.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000785 | Metagenome / Metatranscriptome | 891 | Y |
F001754 | Metagenome / Metatranscriptome | 641 | Y |
F013298 | Metagenome / Metatranscriptome | 272 | Y |
F054034 | Metagenome | 140 | N |
F066783 | Metagenome / Metatranscriptome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114340_10086931 | F054034 | GGA | MLTISGYKKLEGLVLKDGLKVETINEFDDRYSIWLSDKINIELERKVHWENHRYRYYKTYIGTFASNAMTEFVMTRTINTLDRMKAHLIYIHEKYITK* |
Ga0114340_100869312 | F001754 | N/A | MSNNPKFEVVVTFKDFLGKTHNIVCRNRRKLAEANEFLKMFKTESVKINKILSEYPVVMGQFPKKYHKEIRMELNSAGFGSVANFLIK* |
Ga0114340_100869313 | F013298 | N/A | MGTFYFKLSTMNIREFYVKNYPTDDMGKGINPNATFDGLWKILNTYGDVYEYLYVYDSIIRERLFEKLASNKGCDYDVIYQQWLRA* |
Ga0114340_100869314 | F066783 | N/A | MNMNQTTEKLVSIFTQNELSALMTAMGGYINTKNKQKRPTGVETVLFNKIVDALLVCNYMNAVEMVNTKTNRMGAAEYKMSEAQLEAMYESDVRAHR* |
Ga0114340_10086936 | F000785 | AGGA | MRVTNKRGMKFDCNRLMRWAEEKLGPSKCTAIAFTWDIEEESLGWYDWEKTIWINLAHCKRMISVQKTLLHEWTHAQQTFRWYNHYQLTYGYKNNPYEIEARENEKLVKRAYKKSK* |
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