Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1009437 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8215
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8215

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F019318	Metagenome / Metatranscriptome	230	N
F054030	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10094372	F019318	GAGG	MLASLLIATQGLMPSPTPLSIGVQGLLFIPVAPPISPTDLPGGGGRGREERKVTVKVLGNRLVFSVANVEACAGSRIQVVGSSCFSNAGEAGLSISAKTTVLGSRNHAGVSRAGLSISSTFNVIGCEEENELEVYLMAQAAMALMDD*
Ga0114340_10094373	F054030	N/A	MDVIEGVSIISISEAKGHGLYVDETTLMQVKECAESYKGGVKVNLDHGAGIKDIVGFVNNFRIVGKQLLGDLNLLETSPMRDYVLEISSKLPDTFGISIAFSGPIREVEGLAFASCTELYSADLVQTPAANATGLFSFTAKQVDSFPKQMEDATIEIEPKEDEVSIADIVSRLAALETAFGDYKSKMEMPAEEPAAEPMKEEMAAELSAISKLEAKLDTIISNFGAAPVKASVVAEEKAVEKFDLKAVITQKTEELGSRTEAIRFAMRNHREAYIEARDNNELNF*
Ga0114340_10094378	F008495	AGG	MFECLPEYHGLFAMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASELGWSDYVYGLFPEGKDIDRQIILNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVITAAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDANEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRIERKF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1009437

Overview

Ecosystem & Geography

Associated Families

Sequences