NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1012979

Scaffold Ga0114340_1012979


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1012979 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4069
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_101297912F010248GAGVRKSDRIRLLEMEMLRMQFQIEYLNTAVRLLLDENKVVGPEMDAGKWYNAKLNKDK*
Ga0114340_10129794F013878AGGAMLNLTELGVEVFIKKAKNIDPYWDNYDLVIWKKDSNGFTDIKGMFRENAWGTAERIAVNSNGIWKLPAKYVRHFK*
Ga0114340_10129796F000473GAGGMFIDKGSDKLKEHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKRPSMLLMDIVKYPDFLALRLYEDNFLQFEGTKKEMVIDYVTKVKKLIESYGVRCELEGKPSERVL*
Ga0114340_10129797F011938GGAGGVKEYYDTTHIVFIHAEQCHGTVEKLGAWASTVRYNKDGIEYSDLMENEEFTIVDEIVFKHIEESN*
Ga0114340_10129798F000671GAGGMEKILCYSCNKSKNKLDVKRSSLLPINLLVCESCSSTKLEPRWVIILAGRSNGADYVKEFIIKRRYLGNEITASELLI*
Ga0114340_10129799F002060N/AMDYTSIVIAISAAILSGMGTAIIAGLRDNKKEKVRQQEREQDHLKLEVKDLKISLYKIERELTEWKDKYYNAIQELISVKSELEETLLKLSFIDHHIEDLESLDREF*
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