NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1015764

Scaffold Ga0114340_1015764


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1015764 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3620
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y
F043940Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10157641F000450GAGGVGDRANFGFVQPNGETIVLYGHWAGSNMLGKLADAVIAARPRWNDPSYATRITISQLIGDQWNMETGWGLHVNEISDNEHKIAIVDWEQQIFSLHEEDDFRNQDNKVRGMKNQAIFTMDLSTFCEKYALNEILTV*
Ga0114340_10157643F007470AGGAGVDYQDGFEDGVKFAREIIVNNIRLWAETSDDGPAFDEIADRIEFGKVDYDL*
Ga0114340_10157644F000311GAGGMYFELTAPNQLALVRAIWDAELNGLDPEKMDSLTFNIGTGSIEKVSRLRDKFNLTESYVSEFEPTGYQRS*
Ga0114340_10157648F043940N/AMKNRFRVEIYDENKNNDVTIYSEQGVDKEYLTELVYSNIRGFDGNVRAYVYDNLRKKKVTAVYVPMEIISRLKTKIPSAPTNLGLV*
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