Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1016805 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3490 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F006744 | Metagenome / Metatranscriptome | 365 | Y |
F009143 | Metagenome / Metatranscriptome | 322 | Y |
F019325 | Metagenome / Metatranscriptome | 230 | Y |
F038205 | Metagenome / Metatranscriptome | 166 | Y |
F084151 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_10168051 | F019325 | AGGAG | MTQLTETLYSTIVHDFHNGGVKSSYGLDTYTRKAILKVLLSSKGCECINCLTKEVK* |
Ga0114340_10168053 | F084151 | AGAAG | MTITYSLWQGSRLLSIGNVATNTKEIDNLIKELNTSDLAKSQKFSANVQEIKVGK* |
Ga0114340_10168054 | F009143 | AGG | MTKWDTIQEDIKDAYVYLDEEEMYNKALEEGLIEFGSDEYDEDEMSKSLTLDWNN* |
Ga0114340_10168056 | F002598 | AGAAGG | MATKLYTIESLLVGKNYRSTNRHFSGEIVSAEHRPEIWYGEKTEAYLIEVNAGGLRNKFATIAVKVGE* |
Ga0114340_10168057 | F000447 | AGG | MGYIEIFRVNEEGAGWVDLSEATPEEILDLEIGLFQEGAI* |
Ga0114340_10168058 | F006744 | AGG | MNLEEFKKHVIAQREASKAQALSVLSATIPTTTNERENLNG* |
Ga0114340_10168059 | F038205 | GGA | MAKVKEYLEIISAQCDECGGAGFLFWGNENNFDVESCECALEDWNI* |
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