NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1016963

Scaffold Ga0114340_1016963


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1016963 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3475
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10169632F024097GGAGLANPNGRKGALFETSVMKWLRERGVSAERLTKAGSRDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYASARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE*
Ga0114340_10169633F096878GAGVGLLINRDPLFSVHNSLNGDVAIYLEERDANLDLVEDVLAAVPMAHLESIESLLITDLKSADAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK*
Ga0114340_10169639F020909GGAMITKRGKRVRAIAIAVGIIVIWQVASNLWWVGIDAPNAEFLGWCWGSMSECVVL*
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