NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1020571

Scaffold Ga0114340_1020571


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1020571 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5120
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002598Metagenome / Metatranscriptome544Y
F003690Metagenome / Metatranscriptome473Y
F006744Metagenome / Metatranscriptome365Y
F008132Metagenome / Metatranscriptome338Y
F024319Metagenome / Metatranscriptome206Y
F080026Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_102057111F008132AGGAGMTKWDTIQADVQDQYAHLAEEEMYEQLMAEEEDVFGFIKAIQIDHLTDEQIDEVFNMFGDK*
Ga0114340_102057112F003690GGAGMIPSGFELVISNDYGIELDSFLGSIYLPWHTIAITTALLIAYKIYKRKKNK*
Ga0114340_102057114F002598AGAAGGMATKLYTIESLLVGKNYRSNSRHFSGEIVSAEKREGIWYGENTEAYVIEINAGGLRNKFATIAVKVGE*
Ga0114340_102057115F000447AGGMGYIEIFRLDEQGAGWVDLSEATPEEMLDLEIGLFQEGAL*
Ga0114340_102057116F006744AGGMNLEEFKKHVIAQREASKAEALSVLSATITKTNEGENL*
Ga0114340_10205713F080026AGGAMAYSQEQMDFAHKVVVRLMEILKVCPNVDNKYRCNTTHQKVHQRCIDLMVLLAEITNLPEYLQYLGNNPETKSDPYGFILAYPPAESIVKHEIDREEELLDLHGKVVDLE*
Ga0114340_10205719F024319AGGAGGMTNRIWESRNDYLNDAKRLGYVECSNGCGRVTAWTLCVMCGGNYAEHGVR*
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