Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1020900 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0114340_1020900 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4299
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4299

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10209001	F005054	N/A	MAEILIKSQSPITHQVFWNGDVAVADSLPTVKLYDITMDPAISPSINPTHLLTMLTSVEDENNLGSYTVNIPYQYTDRNKTLRLKWEYTINGTSVLREDEVFIVTPYVDFNHVQDLGFSTDSSDPNYKSYKELLRAEKYARKQIEEYTGQKFYLYDDLYVVYGYDSDTLPVPSKINQLHELYSNDVLLLDTINAIDNWNYPVEISESGYGIRINRAGLLDNTVYTANGMVPPSIHDSSGIFQSGIAYKIQGRFGWEKVPDNVELAAIELMKDYFSKDTMWRNKYVKSISTFDWDFEYTGDAYTGTGNAYADNLLADYVLTTKVEII*
Ga0114340_10209002	F001229	N/A	MNLDVYRQSEIQDPDTGAIVREWNYYKTVACHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTAEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0114340_10209004	F000258	GGAGG	VTANYKLDAMLELRKYLWKELHTRNIFDEEDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWTGLSDKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL*
Ga0114340_10209007	F005479	N/A	MPELINTFQALKKKEHNEKKFQASLKGVEIGEYEEDKKEASSFEDIQLRAAGINATSNDVVSLQGRFAAQAGFGIGEGLGYSRE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1020900

Overview

Ecosystem & Geography

Associated Families

Sequences