Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1024865 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7946
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7946

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F002935	Metagenome	519	Y
F005741	Metagenome / Metatranscriptome	391	Y
F019321	Metagenome / Metatranscriptome	230	Y
F020171	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102486512	F005741	AGGA	MRNRFRVEIYDANKAHDLTIYSETGVDKEYLTELVISNLRKFQGKVSAYVFDNVKKKKTTALILDEAVVNKLNAPRILTAVEVGLI*
Ga0114340_10248653	F020171	AGGAGG	MSEQFIDTLAEHITGAIQQEISEDLFDNWSNRNLDEGPDYAEYMFMQYASDGLKQQYNEYYGYIEGDEFLL*
Ga0114340_10248655	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLGRLADAVIAARPRWTDTSYATRIAISQMIADQWNMETGWGLMVNERGDNEHKIAIVDFEQQTFSLHEETDFRDEGSKVRGMKNEAVFTMDLSAFCEKYALENILVN*
Ga0114340_10248657	F000311	GGA	MYFELTAPDRLSMEMAYWDAQMIGLDPQALTPLTFNIGTGSIEKVSRLRDKYNLTESYTSDYEPTGYTGR*
Ga0114340_10248658	F019321	GGA	LSKINTVKDIILEAYEMSDDQETLQSIAEALGIELTRDIQFTATIEVSGTVTLNLLEDYDLESEITDSLYVDANNGNIQIDDTEVCHVREA*
Ga0114340_10248659	F002935	AGGA	MDRRESRTNGYIGTIVDGKKLAQIANDIYRLQYSNDFSECTVDGLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVETVKSCLTDRTEDIADYIRIFGDRLDRNCSLWQSKMSVGAGTLAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1024865

Overview

Ecosystem & Geography

Associated Families

Sequences