NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1027869

Scaffold Ga0114340_1027869


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1027869 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3097
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000450Metagenome / Metatranscriptome1126Y
F001781Metagenome / Metatranscriptome635Y
F021288Metagenome / Metatranscriptome219Y
F037727Metagenome / Metatranscriptome167Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10278691F000441AGGAGGMQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLIKDRMSEQEGTNE*
Ga0114340_10278692F001781GGAGMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQDDVLEWMTNRDYIVDTMFEDDEEEEEDATD*
Ga0114340_10278693F000263AGGAGMIPDNLELPAHLQRMVDAGVSGLDIMHGELKNLMLMAESDLAEASEQEQRSEEAMDSMVRTECEGRLDALVALYELTYQLSFAIGARDEA*
Ga0114340_10278694F092053AGGMKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYQRLTEIYKVAYEAGVNSK*
Ga0114340_10278695F037727AGAAGGMSKSSHFLEYMKLHRLSLIQDNANLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNNSNERVYE*
Ga0114340_10278696F021288GAGGMLGYTQQNLADMTYGVYQADLLVNADENPAIHNYLVMAHDFLQGLWAEGYFDHV*
Ga0114340_10278699F000450GGAMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWNSETGWGLHVNEIGDNEHKVAIVDFNQQTFSLHEEAPRNDLDNKVNGMSNQAIFTMDLSNFVEKYADVTLSV*
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