Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1052752 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1772 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001781 | Metagenome / Metatranscriptome | 635 | Y |
F021288 | Metagenome / Metatranscriptome | 219 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_10527522 | F000868 | AGGCGG | MSFLENENQMVIDATYAEIGEMIVEDWVNANLDEGQMYADFRFAEMSDSNYLKGRFNLFYDLKEGDQYYLEWDEEA* |
Ga0114340_10527523 | F021288 | GAGG | MLGYTQQNLADMTYGVYQADLLVNADENPAIHNYLVMAHDFLQGLWAEGYFDHE* |
Ga0114340_10527525 | F000263 | AGG | MNNEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQALEDETEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGARDEA* |
Ga0114340_10527526 | F001781 | GGAG | MKPEDKDKLNECLKILDTTDLGLSMVWLWTWSTINNILDDETFRAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQEDVLEWMLNRDYIVDPDMEEEEED |
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