Scaffold Ga0114341

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10000658 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38294
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (71.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

38294

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (71.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y
F103232	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000065836	F103232	N/A	VAVDLTGATIDAQIIRRQLSDIKDTRYGLTFDISDYSPPPSPVALTITNRDDEEGTFTLVIDESSWDVISSDPQLDINAQECVGFSGRIKISFPAAGSTPAQDNIIFLLFLVRSDGVVN*
Ga0114341_1000065838	F000324	AGG	VTIRVPPAHSFTYDGAIVNVFHANKGEGLPKHEHVYSHATFCAAGSCIVRKENKEVIVTKQTQPINLKENEWHEIEALENETVFINVFSEIKK*
Ga0114341_1000065843	F002085	GAGG	MNVIAPVENTNNIRYAQFVRVTTADEVFRFATTPAPITVPSVDAQPFDAVGVLMKVGDAQKDIKSTANETAFTLIGIDTAMLGWVLSLNVKGSKIEAWNGFFNTDGELITGGGSGGLYKFFTGYVSSFSISEEWLEEMRQFVGTITVTASSIQLILQNRTAGRYTNNNSWQFFNSGDTSMNRVAFVSTINYYFGKTQ*
Ga0114341_1000065844	F000934	AGTAGG	MSLNTILAISESVGINDQRFVGQMLSRNQRISTSEILTVVPFAFTMKPMNYLLYSENRNLLADLRYYDKSLTQYLNFGTTGWINYIEYQSDMTSGQISACQWQTASANKTLVLGSLPSISSSAYIVRKGDFCQVGLYSYIATSDVQRGSGSTVNIPVHRNLLTTVTSPIAAVIGQYGTTVSMGGSSYTGTTFPVILREYPTYSLMPITDDSFIQWSGNFVAFEAVL*
Ga0114341_1000065852	F012668	N/A	MSITRYENISVNNVTNGTNTIGEYTTTITKWFDTRALVSDVVNSLRISDRYRSYSDIVNLTVNYTPNTKEIVNNQNLYSITYRGFDWRIGDVRESNDRMKVTFMCYRNDPVVAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114341_10000658

Overview

Ecosystem & Geography

Associated Families

Sequences