NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10002189

Scaffold Ga0114341_10002189


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10002189 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42424
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (75.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000450Metagenome / Metatranscriptome1126Y
F009685Metagenome / Metatranscriptome314Y
F013756Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1000218933F013756N/AMTNDLVSTKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVVNDTITPSNQTKEEKMEDTTTIGSDAFHSPAVEYNPDLLVTYKVLHGYSDPEFTTSKVASLEWDLHNGRQSQKNVSLLQSKINTVKDIILEAYEMSDDQETLQSIAEALGIDYGDGLLGCTNDWAGPTGINTVDIQHWNW*
Ga0114341_1000218936F000450GGAMLGRLADAVIAARPRWTDTSYATRIAISQMIADQWNMETGWGLMVNERGDNEHKIAIVDFEQQTFSLHEETDFRDEGSKVRGMKNEAVFTMDLSAFCEKYALENILVN*
Ga0114341_1000218940F000263AGGMNNEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLMAEQDLADALAQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGERNV*
Ga0114341_1000218943F009685AGGAGGMSDQYVDEVLNKAQKLLWGGSETENIEAHNLISKLIKDRMEHSESGAE*
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