Scaffold Ga0114341

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10061109 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2406
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2406

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010598	Metagenome / Metatranscriptome	301	N
F011064	Metagenome / Metatranscriptome	295	N
F024720	Metagenome / Metatranscriptome	204	N
F057098	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100611091	F024720	N/A	MLIFIKLTVIFQLTKIKNFLSEYAVELAATDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINDYTTPFRVTKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDAARVHTPAAGSIPNNVLETHYVLGSTRATIVPSSGKTMSFFYKPVYNTSIETIADGLASIIPHMSSVMCLKANQYPN
Ga0114341_100611092	F010598	N/A	MLQNLKIMTSLTTPRRVIIFGGSNARRIVPFLLELTKGKGIRIEDRTVSGHSLGDLRNFPKSTEVREKDFIFVLSGGNDIFEKHIKIHRRFGKVHKICLTKCIPNPLSSIQRLYENLKEKLKDLKCHKYVITNPYRHLYCCPEHYDVTYYGNILRAQNAANSCLIKTLKAAAVILKVEKIIGLSCKEKRRGYPDHMIDSVHFKQRFYLRAAQSLCKIVSEKSSSC*
Ga0114341_100611093	F011064	N/A	MGIKILYFQKMARESVLDNFWQEFAAIEWASDMSLGDLFDVSLWTHKLCASLCDLHMISQAPRISQYDLNTVGANILGFVFNIYRCKMDQLNLTLEIDDHWVNFETQRDSEILKSIKRLQEILIANKIMSNEGSDRLRQSYTLCRYRADIQSDQDLGYELSCVLQFIAIKTQLTLRQLAFLRLKIINPTLFERQRVEKIGLFKPTDSPTSSPETEIEPPSKKAKK*
Ga0114341_100611094	F057098	N/A	VASQKVDDNFIRLLSEILRFILAWTVPLTLREIALYKYFKLDPVGYEHDKNLKIGLFDNPPVVECIENRVSIRMEELTRQGENILVSTPKPEDSNRAQTLVEEKEKLEFLSNWFIWE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114341_10061109

Overview

Ecosystem & Geography

Associated Families

Sequences