NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114342_1043956

Scaffold Ga0114342_1043956


Overview

Basic Information
Taxon OID3300008109 Open in IMG/M
Scaffold IDGa0114342_1043956 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-53-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1295
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F010534Metagenome / Metatranscriptome302N
F036561Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0114342_10439561F036561N/ATLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEREIENLQSIAIAEEKVDLPESLEVAQ*
Ga0114342_10439562F007918AGAAGMSDTTLEEIDPFLNSELHMKAEIKQELLSILANVETVTEAMSKAILKEEDRREQFRILCSSIDYLFGENIKVIEKRKEDLEEIDPSLHSIACKLSTRMERLRDVAIKPDLKSMKTGMRRVLSQQRIEKFQTNPQQEERRPQKG*
Ga0114342_10439563F010534AGAAGGMSDRIGEKQETIMNLIDQQIKGALKDQASRLEILQERIKDAIDIGTTEHSQGIKQVMLFVTKAHVQAWIASLKHKVDTAGDDCEICDLEKILGEESLEIAEAVKVALNNRNEEARKRVLGELLEETTTKIEALSVRAPQVPQP*
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