Scaffold Ga0114343_1000584

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114343_1000584

Scaffold Ga0114343_1000584

Overview

Basic Information
Taxon OID	3300008110 Open in IMG/M
Scaffold ID	Ga0114343_1000584 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24138
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006502	Metagenome / Metatranscriptome	371	Y
F057002	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_10005842	F006502	N/A	MKPQKTTIMIGLLGDKPKMGEKEEGGLLAEDKSSCPLATQDADINKGNMKKAVLTANYGEKGDGEGKCKACEYFCTPKEMPDCGLEKTMGYCEIYDFMCNQNNGCDAWEAIGEEEMEMEDEE*
Ga0114343_100058434	F057002	N/A	MTTKQFNQALHDYYDPPARDAVTKWVKMKWGLECRENPNVYGVDLLVYRADKLVGYIEVEVRSWDYCHYPTIHCSHRKEKLFQQDRPVLFFALTHDLIHAYWVKTQVIEGSPLIEVKNTEVPAGELFFDVPVKHFKYVNLTDPF*

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