NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114343_1017187

Scaffold Ga0114343_1017187


Overview

Basic Information
Taxon OID3300008110 Open in IMG/M
Scaffold IDGa0114343_1017187 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3293
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006182Metagenome379Y
F016812Metagenome244Y
F043402Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0114343_10171872F043402GAGMIDKFKELVEELDEKESSNLIIILSSLLEAWEDDKINLYSEIQDFELSAIYKVLNLFNEQTKDAS*
Ga0114343_10171874F016812GAGMNTLYPELIAEEDEATFSSNLFKLYKLEDRCNKYEAPSFRIIFLKDKNTQVHVSNHFNSPNCIITYYNVEDKSCIDARTISKKLYNKIADHYFEVKRNHY*
Ga0114343_10171876F006182AGAAGMIKYISRPIMRIDFIVSGVMEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEQGAGGFDILHQFEDMENHNIKNLRYDDAEFIEN*
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