NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114343_1042282

Scaffold Ga0114343_1042282


Overview

Basic Information
Taxon OID3300008110 Open in IMG/M
Scaffold IDGa0114343_1042282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3448
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000868Metagenome / Metatranscriptome853Y
F001125Metagenome / Metatranscriptome769Y
F007470Metagenome / Metatranscriptome350Y
F015988Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0114343_10422823F015988AGGAGMESEYINRTGQLKEYIKLHIISLEQDLENISQEMEELDPESKACKELDYEYNYISGQSIATRHILSVVEDIMGS*
Ga0114343_10422824F000868GGAGMAESFLENENQMVIDAIYQEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNLFYDLNPDDQYYL*
Ga0114343_10422826F001125N/AYGHWAGHGMLEKLADAVTAARPRWTDESYATRIAISHLVGEDWNQELGWGLHVNEIGDNEHKVPVIDWRNQTFTLYEEDLKTKVFSMSLVDFCTKYSQLIMV*
Ga0114343_10422828F007470AGGAGMDYQEGFQDGVTFAREVIIANIRQWAESSDDGQVYDDIADRIEFGTVDYDL*
Ga0114343_10422829F000311GAGMYFELTAPDRLSLEMAYWEAQISGLDPEFMPPLTFNIGTGSIEKVSRIRDKFNLKETYTADAIETGYTRS*
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