Scaffold Ga0114344

Basic Information
Taxon OID	3300008111 Open in IMG/M
Scaffold ID	Ga0114344_1000032 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67672
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (81.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

67672

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (81.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F003408	Metagenome / Metatranscriptome	488	Y
F003643	Metagenome / Metatranscriptome	475	N
F010085	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100003210	F001464	GAG	MARTTRQRVQKKLIYFFLNDKIHKVLKSSRSKDEVIAWCYPDKKRMLYSYSDIKKYSETAYTINDVCKMLNKHKVTIIDYILEGKIKAPQKVYPISNPESTWSKYMFNQKDIYDIHQFILDAGHSSEIPSKKELEALLKHNIILYTKTNDGSFVPVWKAD*
Ga0114344_100003225	F003408	AGAAG	MPELIQTLKAVNKKEDENRRFMASMQGVELNEQNTTEGPSFEDVRRRALGVNASGDDVVSLQGSFAQQAGFGIGAGLGYSQE*
Ga0114344_100003228	F000258	GGAGG	MTVNYKIDASYEIRKYLWDQFLTIGIFEEDDYWSDNLGEVTVPIIPVQQNAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQIAFTLYATNVAEIGEMRNFITDLFRRMDDSAADVNTFLGVNSKFKFHSIYVAEISPTEPSEELKGFFSADVIIEAKYSRKVDGRGRFL*
Ga0114344_100003230	F001229	AGGCGG	MNDLVEAVLSMKADVYRQSELQDPDTGEILRSWMYYKTVNCHAKGVISNSATTRSSDRQTFSNKYTNEQVIQVRTLDRLISREKITNIRDSAGNVIWKEIDYPNETPTVFEVIGTTPITDPFGQSIGFSTSMKRSENQQIGY*
Ga0114344_100003253	F003643	AGGAGG	MKQDLNNDGKVTMQEKILAALASYGRHFLGATIALYMTGNTDPGDLIKGGIAAVLPVILKALNTNEPAFGFTKKQ*
Ga0114344_100003259	F010085	AGGAG	MKIQVVSEYLTLAREGLVPGIECPMDQGLLFCNQDLEDNIFFYCISCNYKNYIGIEVYNNLEKIVNGNR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114344_1000032

Overview

Ecosystem & Geography

Associated Families

Sequences