Scaffold Ga0114344

Basic Information
Taxon OID	3300008111 Open in IMG/M
Scaffold ID	Ga0114344_1000847 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28581
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (68.33%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

28581

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (68.33%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (53.85%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008814	Metagenome / Metatranscriptome	327	Y
F013414	Metagenome / Metatranscriptome	271	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F038246	Metagenome	166	Y
F073544	Metagenome / Metatranscriptome	120	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100084710	F038246	AGGA	MGILDNLEAYLEAAEETDKCYYCQAIATYNDIAEVDRNYQIVGVCGCHAYKGLVS*
Ga0114344_100084713	F006846	N/A	MLTNLVERYLMRPKRLREAIQAVVHDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREKEVVKSSLFENQVDFE*
Ga0114344_100084715	F026561	N/A	MSNFTKDDGTGMTPPGGAGSASGAVTSREATRKYPKQGVKPRIKIDVNSHGIRRETSLDPKPKKTRPKKV*
Ga0114344_100084716	F001280	GGCGG	MCIECGCEAFGSETGIVPVTITDVSRDGESGLTLDMTSTPEQTRQFINE*
Ga0114344_100084717	F073565	AGGAG	MTDGNNLTGFNEVKPATATAWNGEQYAADPASAFSSADKSTQDGSGLGNGGK*
Ga0114344_100084721	F014017	N/A	MDKLIEYLDESHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKQNG*
Ga0114344_100084725	F008814	N/A	MGEQLTILEEIIKEIGEELYQKWYNGLALEDRTEEASKAMSVNAGETAVWVIQTFMNKFNSAADELKGE*
Ga0114344_100084727	F016396	GAGG	VRKSERLRLLEMQVVRLEMMVELYTQSLTNLLQSQGLQTPTQLDAGKWYKAKLDKLDNE*
Ga0114344_100084731	F000671	GAGG	MEKILCYSCNKTKNKLSVRKSILIPINLLMCETCISSKFEPRWVIILAGRQLGPDSVKELIIKKRYCGNDIAASELLV*
Ga0114344_100084732	F073544	AGG	VREYYEVIKIVFIHAERVYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHVEESN*
Ga0114344_100084733	F000473	N/A	MEFINKDKDHFRYGVNEWTGDPNKPVFYTPEMAKRIREIKKPDMGLQMDIAKYPEFLAIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN*
Ga0114344_10008475	F013414	AGGCGG	MSKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRHNDELTTESGIYNSGQSCEGLFLAHELNQTLNKLIKQYKWENIKLPVDPDKVIKKLPKAEEQSYRYSWLHDKDNRQHVTIDHPFI*
Ga0114344_100084756	F000369	N/A	MSEIELSQHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDNNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQEVLVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPVEASDVV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114344_1000847

Overview

Ecosystem & Geography

Associated Families

Sequences