NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1036503

Scaffold Ga0114344_1036503


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1036503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3274
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009073Metagenome / Metatranscriptome323Y
F021984Metagenome / Metatranscriptome216Y
F030087Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0114344_10365035F021984N/AMNTIPRGYTITPKVKYLRTKDGKKRTNLVELVHKRRGIKKLFGNEEYALKYITKLETEKVTSNALAGKGAPTLGKSAILSAGKDLIASKELAGEFDEPLNENE*
Ga0114344_10365037F030087GAGMSSETRREVLDIIMEIGYGENTFMLTNSMYGLFDGYLYDELIQYADEVAMSRNLYRRILKVFNTVCKYPKYARYDEPTESYNEPEPIEYVEGMGVADGKLYLATN*
Ga0114344_10365038F009073N/AMKNYQIILTSILSFSVAYFILNGTAAEYVPFAGPENELGCAVIALTMGVLSTYAIDWKSFIQFLNK*
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