NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114345_1122130

Scaffold Ga0114345_1122130


Overview

Basic Information
Taxon OID3300008112 Open in IMG/M
Scaffold IDGa0114345_1122130 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)857
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037570Metagenome / Metatranscriptome167N
F039941Metagenome / Metatranscriptome162N
F057095Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0114345_11221301F039941N/AMDIETLALRLEEIKLSRLEVLKEKKVLAEELLDGRLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHAR
Ga0114345_11221302F037570AGTAGMNIKKLDLLKIRNLKFRASQRQVVIDRLLRKKDLEKDLWKVSIKTLIILAKIKFRCEELERISDNLQLTVINGY*
Ga0114345_11221303F057095N/AVSLEIKQILAKSARIISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIVTLEKVSIANKLLIKTLSEETRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQLEAKSRQWSNEYQET*
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