Scaffold Ga0114346

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1001351 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29034
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (78.69%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29034

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (78.69%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F008245	Metagenome / Metatranscriptome	336	N
F026561	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100135112	F000369	GGA	MELELADHYDRMNRVVEELLKGNSATQIASLTGFKRAEVISYIDEWKEVVRNDSTTRDRAKEAVSGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQIADTERKQDILVKILKEVTAVCPKCKLDVAKRLSQITGVVEPVILDPEEARGS*
Ga0114346_100135114	F000376	AGGA	MSTYQELAKQCKCCGKHVPLPTVLKEFEGITLCPTTFSNVIEYKRMWLSLGARPSGNVRKHFSEYVQEIVEKSFSQNV*
Ga0114346_100135136	F000473	GAG	MENNHFKHGINLWTGEPNKPVFYTKEMAKRVREIQKPAHDLQIDIVKYPEFLAIRLYEDNFIQYHGTKKEMVIEYVSKVKKLIESYGVRCVLEGKPSERVL*
Ga0114346_100135138	F000671	GAGG	MDKITCYSCNKSKHKLNVKMSSILPISLLMCESCINSKYEPRWTIILAGRQNGPESVREFILKKRYVGNDISAFELIV*
Ga0114346_10013514	F008245	AGGAG	MTDKNTLELISDITEFNDLHEYMKDEHLDRAMGIVIKMLMTPDVPAAKAPQLIIELQAMSAKFGMLAAYYTTVGKDKAGSVNNNKKNVYYSVKESIDKLVDALKYIVRYNG*
Ga0114346_100135153	F001280	AGAAG	MCVECGCESVGSETGVVGVSINDASRSGEAGLTLGMTATPEQRERFINE*
Ga0114346_100135154	F026561	GAG	MSDNGTGMQTPPNNQPSGAVTSREAGKKNPSQGKFRSGLKVDTNKHGIRRETSTAPKPKKTRPKKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114346_1001351

Overview

Ecosystem & Geography

Associated Families

Sequences