NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114346_1001634

Scaffold Ga0114346_1001634


Overview

Basic Information
Taxon OID3300008113 Open in IMG/M
Scaffold IDGa0114346_1001634 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29604
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (58.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036693Metagenome / Metatranscriptome169Y
F039621Metagenome / Metatranscriptome163Y
F040943Metagenome / Metatranscriptome161Y
F068427Metagenome / Metatranscriptome124Y
F070854Metagenome / Metatranscriptome122N
F075702Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0114346_100163426F075702AGGAMIQIENLTEYQVEMLDHMWSLDSLEEYEEWYNLLDDEDQRLADSLQEMIILAEMDNVMGDCKDAKELLKKFAL*
Ga0114346_100163427F036693GAGMYNKTMKPRNPIAKDLRTPKYRMRVVESKVQYIRQPKHRKVNNEFQ*
Ga0114346_100163430F039621GGAGMKIVFILVVILVLLVLFPLATIWSLNTLFPALAIPTTIDTWMATVILGGVVGGTSGVSFGGKK*
Ga0114346_100163438F070854AGGAVKKFAILWLLLCANAYADVSFGTGESTDCNIAKALAVSDAIERYAEKEFEVKKQHICRERNAEGIECEYVKKTEIESAGTLKKVLSEKVKQKKDICVVEVKVELDQSRPLAGDIENASNFAYNGQKYPFDVITREPMYVYLFSVYDDKMHMMYPYDGIKSNLLHGKLTLPNGIWWQADIMSNAPESKDTLMAVFTKVKITFGSSMTRDEIYRQISSVPINARRVVYHNFVIKRRT*
Ga0114346_100163460F068427GGAMNIKDYQMEPKKPLSFEEWKGNIAPQYSGDKLKAFDRLHSLDYEKEFNAMLKSEYAEYLSNLNGDWLLK*
Ga0114346_100163466F040943AGGMGYKEKVCPKCNSVHNKRGVYCSRSCGNQKSHKPETKKLIAKRQSEWMSSGDERAEAQLHSFTSLGNNKVAEPIAPIVPVDVGYRRYVEDGDLWEEV*
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