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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008113 Open in IMG/M |
| Scaffold ID | Ga0114346_1003390 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10267 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F002794 | Metagenome / Metatranscriptome | 529 | Y |
| F003964 | Metagenome | 459 | Y |
| F009743 | Metagenome / Metatranscriptome | 313 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114346_100339011 | F001872 | N/A | LGVATAKANPNARPYTGNSDGASAGPRAGMNEFIKQVLHHSNNAMWNNGSWGVRDVRSKPGTMSVHATGRAVDLSYRGGERHPNASRKAALPFVELLCTHANDLGIEMVIDYFPAPYGRAWRCDRQAWKKYSKPTVSGSPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA* |
| Ga0114346_100339013 | F002794 | GGAG | MSEGCAWNQGELTEETRRMVLEQAMTTRHDMAIFDLINQIADTSTNPHASIIRRLRAMKNSLSLEEPMPLHDVTTLDLAIKALQAHS* |
| Ga0114346_10033904 | F009743 | AGGAG | MKIKLELKRTPDSAPEYYYTNLFVSTEWERITGRNLQQMVNAPLESDYCVWMHVILKMRGEQVGDNWRDWVKSMPEMEIIPVLDETNPNPTDAAPTAAN* |
| Ga0114346_10033905 | F003964 | GGAG | VAEVSAKIEVVGLKEALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSNVPLSGMARNWSTRSGFKMLPWIPGMKQKIAAKINTRNIKEYGGNKSNVGTFVIQWQGATGTMFDTSMEGPLGRALTARYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMSEANRETA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |