Scaffold Ga0114346

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1009516 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6817
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6817

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F008237	Metagenome	336	Y
F009530	Metagenome / Metatranscriptome	316	Y
F020863	Metagenome	221	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100951610	F046323	GGAG	MTNHFQVVYETKGVKVVNVWLKPDEQLPEQWNTMTCTEQDEWLYEHQVHSNISWVDEYKGNAVNVLPVLSLKAV*
Ga0114346_100951614	F003658	N/A	MLDLRGKPILTCICGCKMFVITVMWDDETREVSWYDLRQECKECGAISTAPTPIDWRDDA
Ga0114346_100951616	F008237	N/A	MTLEWARIEPWQYVVDSVASEYHRKFTDIELEDIRQSLYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLTPVLRSEWGQINKVDLGRPGRPSAPNEGGNMMAMMIEIDYAYWKLTKDDRKLLFLRHAEAMDFPDIAKEMELGSDDAARMRHKRAIRKLINKIGGFKPYSDNDFEQVQQESSEV*
Ga0114346_10095163	F009530	AGGAG	MKITYSIWQGSRLLSIDNNANSPKDIDALITALNDSELGKKTKFTANVQTIQANN*
Ga0114346_10095164	F020863	AGGAG	MQTTVEDLDRLVAVLEELVQPLLEGEVIEATYESNKRPHLVLQLGSKTYGRAYRIFFSGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMIGKAND*
Ga0114346_10095168	F005558	AGGAG	MSESSISWSELAELTHETQVYKFGFCMCEDTEPHEYPYDDCPKTGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114346_1009516

Overview

Ecosystem & Geography

Associated Families

Sequences