Scaffold Ga0114346_1016055

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114346_1016055

Scaffold Ga0114346_1016055

Overview

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1016055 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4122
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F043399	Metagenome	156	N
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10160551	F043399	N/A	TIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDVQEEF*
Ga0114346_10160554	F007310	N/A	MRTVLWNNSERWFNHHHYELLIEDVTGFDLKKSLCEESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQAENNGKIEVA*
Ga0114346_10160558	F076096	AGG	MVCYNTEWENPLYWFDKLLTYTEHAELRRIERDLPLVDFLPLESKFLYRTLKRDVYSMTFETVVNHKRMEIAINSLGYVMTVYPVLITKADKFQYKYKQYLGAFKQPDDYCPPVISDFNFLEGTA*

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