Scaffold Ga0114346

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1028624 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2930
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2930

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y
F025979	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10286241	F000258	GGGGG	VTANYKLDAILELRKYLWKELHTRNIFDEEDYWSDNLNESIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQVMFTLYSTSVSDINEIRNYMTDEFRRMDESAKDINKWTGLSNKFKFHSIWVADISPIAPSEELQGFFSAEVILEIKYSRITDATGRFL*
Ga0114346_10286242	F001900	GGAG	LDNSGLLVQAASGLERMMHSNQSGPLKDSTVAQVSAFVYYEAAVISKLTSSAKFKALFVNTVFNQVSEDFGNYIDALARSKPKSLHHVYEWQRSGDKTARLFKVNKISEEGLSFRLNYDFLPSRSMVPSSNGKRRHMFKNKASIMEAGKPLVIRPKNSERLVFEVDGETVFMPKGQSVTVKRPGGSAATNQFTLAHSRFFSGRLVNESIKKSGFQRIFNSSLTKALRVPSNIKKIQYSFSPNLIRSQADEALAASFGGVM*
Ga0114346_10286243	F001229	N/A	MNLDVYRQSEVQDPDTGEILREWNYYKTIACHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0114346_10286244	F005054	N/A	MAEILINSQSPITHKVFWNGDVANSDSLPVVKLYDVTNDPAISPAVNPTHLLALLTSTLDDNNPGTYTVNIPYQYTNRNKTLRLQWEYSVGGTSVVRSDEVYVVTPYIDFNHVQDLGFSTDSSDPNYKSYRELLSAERYARKVIEQHTGQNFYLYDDLYLVNGYDSDVLPLPAKIYELHELYANDVLLLDTINDMNNWNYPVEISESGYGIKINRANMLDNTVYVANGMVPPSINDYSGIFKLGVPYKVQGRFGWPKVPDNVELAAIELMKDYFSKDTMWRNKYVKNISTFDWDFEYTGDAYTGTGNAYADNLLADYVLTAKAEII*
Ga0114346_10286245	F025979	N/A	YDIMGFTFTKEHPFIAMNNETAQAIFDKEEGFRLATPREVQEYYN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114346_1028624

Overview

Ecosystem & Geography

Associated Families

Sequences