Scaffold Ga0114346_1053324

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114346_1053324

Scaffold Ga0114346_1053324

Overview

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1053324 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3579
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F018539	Metagenome	234	Y
F028100	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10533245	F006112	AGGAG	MSYTLYIYKADKRCNTGERLFSSTVWPVKDDNAMRRTVAELFPLYRPEDGFRFDWTPSMKTVRNLMSGVEIEIPHDTPRSCDPSSELYWSM*
Ga0114346_10533247	F028100	GAG	VNKSVLSRAAKHFYRAKTEDKNWLLCAELRKLNSKDEILVYVHEVIRGKAAAHKREVEIRRMVKPVLNTDTRGD*
Ga0114346_10533249	F018539	AGGAG	MFNTLAKAKLVHNKQKELYKLVVAFNVHTKQKDNGDIVHIFPTQKKCAYVSGDINYEELQKEVSRLTETAKKQLRTDNIEFV*

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