Scaffold Ga0114346_1055904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114346_1055904

Scaffold Ga0114346_1055904

Overview

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1055904 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1947
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010398	Metagenome	304	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10559042	F043399	AGGA	MKIPPSSHMLLDDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDFQEEF*
Ga0114346_10559043	F010398	GAG	MEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWDELNPHLIQAVVDNEADIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSFEIM*
Ga0114346_10559044	F010398	AGGAG	MEISIQGIAKVNYELVIDEDVFNDACEECGLDPANFKKFTKDDWDVLNPHLVQAVVDNESDIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSVEIL*
Ga0114346_10559046	F018927	AGG	MNKHIEITRHLTVDGTTTYYVVEKSKNASSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAQFDRNGVKHIIPVGNELLEVSN*

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