Scaffold Ga0114346_1063380

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114346_1063380

Scaffold Ga0114346_1063380

Overview

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1063380 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1795
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F028174	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10633802	F000258	GGAGG	MTVDYKLDAAVELRKYLWDQLLTIGILEDRDYYSDNIGKEIVPIIPVQQAPELNQFLSGKTHIVYDKIGMSYEDNWAICCEQILFTIYSTDVSQVNQIRNFMTDLFRRMDESAKDVNLWSGVSDKFKFYSIFISEISPTTPSDELKGFLSADVILEVKYARISDINGRFV*
Ga0114346_10633804	F028174	N/A	TATARGSDRQTFDNRYRNEQVVQLRTAERLTAREKITNIRDSENKVIWTEIDYPNDTPTVFEIIGTTPITDPFGKTVGFNSSVKRSENQQIGF*

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