NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114346_1115203

Scaffold Ga0114346_1115203


Overview

Basic Information
Taxon OID3300008113 Open in IMG/M
Scaffold IDGa0114346_1115203 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1205
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019614Metagenome / Metatranscriptome228N
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0114346_11152031F082581N/AVNTTNSTVNSTSTKTAKVGRPATNLKLILNKSFTLKDLQILNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQSGRKGKPANIFINSKVYKANLANLAKSKVTINVNEPSTVTA*
Ga0114346_11152032F006181N/AMKKNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGMECEMFVNSKKRSLSVNDIVCVNGVYFQCANFGWNEVTAQYVNELEESVSAHPSRAEGAWFALMDVMWERQNVVVA*
Ga0114346_11152033F019614N/AMNVASISSNKIQVEYSAMPGDNREFLTFSVPNGWDDVKKLTNKVLTYNNKDFTFSGWNSDRNECYF
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