Scaffold Ga0114347

Basic Information
Taxon OID	3300008114 Open in IMG/M
Scaffold ID	Ga0114347_1002576 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25078
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (22.92%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

25078

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (22.92%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020651	Metagenome / Metatranscriptome	222	Y
F025481	Metagenome	201	Y
F033030	Metagenome / Metatranscriptome	178	N
F048948	Metagenome	147	N
F054029	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100257614	F025481	N/A	MTHLTTYQMFQYKVYGNILLHDGSSTQNPYDPRLLPKNYDYEDDDYTFTRWIENNAELELLKTEIYED*
Ga0114347_100257618	F019816	N/A	MKELLPFERQILLAEVYHYAWYNEEAYADLLAFIDKYQTILDKPVFLTQINNNDTETTNLESLAYGQDLDTNPSINEVQ*
Ga0114347_100257619	F033030	N/A	MTEKKWSAGAWKKTTAKGEVINFTINDVRYSMWVNAYKTEDKQPDYKIYVNDFKPKEDTEGLPF*
Ga0114347_100257623	F011074	N/A	MQLVGINNPGDVKLAILEDWVRTQYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMIPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDKLFNPLSVFTKLNATGIKKWTKEDGALAKKKLMEIITYKANKMDIITAKQYRDEWTEQWLKNQARAVAVALFFEEQIKIGKVSFS*
Ga0114347_100257630	F020651	AGG	MKVAILLLAQNRHDLTQRVINHNFYNSGYNADCFLIDNGSDTHENFNYPFTGYDLSKEKRGIAAGVNAGLRMTENYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEELPPIVDGVHKTHTPFGDNFITRELIDKVGGYNEAYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTEYRRMKDQSLARAQSVWEKYQDIYHNQNKIRCEYSA*
Ga0114347_100257635	F048948	GAGG	MRKLNALWLLLTHKAYFVAVCKTGMQGDDMTTIGHYTYAMAETLINKHIKDVDTYLDQEDALDEANDILNGIL*
Ga0114347_10025764	F010833	AGG	LLKTTKMKYKQLLQLVGNLNAVIGSQETKTAKKLFQIYNKVKPYHEAYNTEVENLRLDAAQTDDKDCLLLDDKGNYKYSKEGIKKLTKDIEALNDKVFDFQIINVVNQEGLTEFTFLEDWTTGIEFNKQEEEEL*
Ga0114347_100257641	F054029	N/A	MELQQIFETTKEQRVEFTHQLIERLNAGELDPLKTHLQVKALEDMLETLKASKDYKDAVLNAAVQNGKEFDYMSAKFNIREVGVKYDYTKCESPAYDDIMTEYNSAAKAKKDMEEFLKKVPHQGLDIINGVTGEVTRVYPPAKSSTTSVAVSLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114347_1002576

Overview

Ecosystem & Geography

Associated Families

Sequences